GRAIN: a computer program to calculate ancestral and partial inbreeding coefficients using a gene dropping approach (CROSBI ID 244024)
Prilog u časopisu | izvorni znanstveni rad
Podaci o odgovornosti
Baumung, R ; Farkas, J ; Boichard, D ; Meszaros, G ; Solkner, J ; Čurik, Ino
engleski
GRAIN: a computer program to calculate ancestral and partial inbreeding coefficients using a gene dropping approach
GRain is freely available software intended to enable and promote testing of hypotheses with respect to purging and heterogeneity of inbreeding depression. The program is based on a stochastic approach, the gene dropping method, and calculates various coefficients from large and complex pedigrees. GRain calculates, together with the classical' inbreeding coefficient, ancestral inbreeding coefficients proposed by Ballou, (1997) J. Hered., 88, 169 and Kalinowski etal., (2000) Conserv. Biol., 14, 1375 as well as an ancestral history coefficient (A(HC)), defined here for the first time. A(HC) is defined as the number that tells how many times during pedigree segregation (gene dropping) a randomly taken allele has been in IBD status. Furthermore, GRain enables testing of heterogeneity and/or purging of inbreeding depression with respect to different founders/ancestors by calculating partial coefficients for all previously obtained coefficients.
Ancestral inbreeding ; gene dropping ; partial inbreeding ; pedigree ; software
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Podaci o izdanju
132 (2)
2015.
100-108
objavljeno
0931-2668
1439-0388
10.1111/jbg.12145
Povezanost rada
Interdisciplinarne biotehničke znanosti, Interdisciplinarne prirodne znanosti, Poljoprivreda (agronomija)